A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: 7U7F  PDB ID: 7U7F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA5:DT8_P0.159-0.16-0.126-13.138-15.2632.936
15T_DA8:DT5_P0.013-0.165-0.0792.486-4.867-0.087
16T_DC9:DG4_P0.617-0.048-0.20910.815-6.4055.959
18T_DC11:DG2_P0.015-0.1310.143-4.644-4.402-0.711
14T_DG7:DC6_P-0.066-0.018-0.364-2.127-3.034-0.02
17T_DG10:DC3_P-0.246-0.203-0.099-1.151-7.7761.893
11T_DT4:DG9_P2.167-0.724-0.444-8.792-8.979-2.193
13T_DT6:DA7_P-0.08-0.1490.415-6.258-7.3124.336
19T_DT12:DA1_P-0.09-0.209-0.08914.3592.6011.764

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.