A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: 7VNV  PDB ID: 7VNV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
121A_2MG10:C25_A-0.341-0.168-0.06-5.162-5.9631.291
17A_5MC49:G65_A0.306-0.087-0.0881.645-7.3740.743
126A_7SN15:5MC48_A0.1323.6140.169-6.3251.824156.098
125A_A14:4SU8_A-4.238-2.2230.6671.74814.792-96.917
114A_A38:OMC32_A-5.312-1.2750.125-1.8156.303-4.673
120A_A44:M2G26_A0.7591.746-0.211-25.462-18.638-17.445
14A_C4:G69_A0.091-0.0620.174-1.318-5.94-0.605
15A_C5:G68_A0.529-0.1550.0917.416-8.8511.029
123A_C12:G23_A0.195-0.2290.059-1.461-5.977-5.123
127A_C16:G59_A-3.859-7.8611.76447.436-9.1-151.476
117A_C41:G29_A0.183-0.141-0.0761.367-7.1360.013
11A_G1:C72_A-0.18-0.153-0.012-5.857-5.8330.011
12A_G2:C71_A-0.216-0.105-0.196-8.74-6.623-0.822
13A_G3:C70_A-0.26-0.20.006-5.366-8.9110.948
16A_G7:C66_A-0.2-0.114-0.123-5.917-8.577-0.053
128A_G19:OMC56_A-0.391-0.150.047-24.622-26.436-0.713
115A_G39:C31_A-0.163-0.1110.1354.5480.6661.069
116A_G40:C30_A-0.202-0.186-0.3543.075-6.721.466
118A_G42:C28_A-0.179-0.1540.23-3.994-11.041-0.627
119A_G43:C27_A-0.086-0.1360.281-6.221-13.568-1.352
19A_G51:C63_A-0.298-0.225-0.069-1.323-6.503-1.582
110A_G52:C62_A-0.188-0.161-0.225-4.957-7.7230.105
111A_G53:C61_A-0.123-0.157-0.41-15.563-7.024-1.089
124A_PSU13:G22_A2.056-0.543-0.0776.505-8.843-5.753
113A_PSU55:G18_A0.384-5.4120.4718.28518.807-101.388
112A_SUR54:1MA58_A4.287-1.6890.587-3.61312.969-107.906
122A_U11:A24_A-0.088-0.140.161-6.791-6.9043.376
18A_U50:A64_A-0.038-0.2080.216-2.186-5.1891.877
149B_2MG10:C25_B-0.146-0.244-0.136-4.985-10.4960.261
135B_5MC49:G65_B0.263-0.2120.0662.355-9.165-1.617
154B_7SN15:5MC48_B0.023.511-0.255-10.136-9.745153.586
153B_A14:4SU8_B-4.154-2.1830.645.26912.672-94.019
157B_A21:G46_B-7.739-4.5050.02934.03239.395-35.385
142B_A38:OMC32_B-4.365-0.5840.67310.4114.7233.527
148B_A44:M2G26_B0.0851.716-0.573-31.588-14.955-17.804
132B_C4:G69_B0.226-0.1620.0544.255-4.633-0.592
133B_C5:G68_B0.276-0.210.1956.921-8.6390.162
151B_C12:G23_B0.295-0.155-0.0020.409-5.1370.199
155B_C16:G59_B-3.837-7.8871.60245.826-11.508-154.978
145B_C41:G29_B0.202-0.065-0.0772.745-7.4374.026
129B_G1:C72_B-0.218-0.154-0.17-8.056-7.6122.821
130B_G2:C71_B-0.149-0.133-0.314-6.665-2.44-3.313
131B_G3:C70_B-0.194-0.1420.005-0.865-3.036-0.099
134B_G7:C66_B-0.171-0.120.07-3.893-7.9181.837
156B_G19:OMC56_B-0.2180.0210.239-22.589-15.9190.947
143B_G39:C31_B-0.179-0.1430.147.7410.6130.641
144B_G40:C30_B-0.133-0.1570.0821.84-4.9042.021
146B_G42:C28_B-0.228-0.088-0.04-0.863-8.433.364
147B_G43:C27_B-0.162-0.1740.287-3.935-10.824-0.151
137B_G51:C63_B-0.145-0.188-0.312-6.111-8.9110.813
138B_G52:C62_B-0.116-0.195-0.319-8.12-10.2810.409
139B_G53:C61_B-0.163-0.081-0.111-14.753-5.8171.403
152B_PSU13:G22_B1.978-0.388-0.1519.733-9.0653.105
141B_PSU55:G18_B0.595-5.4340.3618.44216.517-100.387
140B_SUR54:1MA58_B4.337-1.7460.753-5.54214.632-105.645
150B_U11:A24_B0.023-0.227-0.134-6.417-9.0491.119
136B_U50:A64_B-0.023-0.160.302-3.53-6.3540.992

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.