7VNV: Base Pair Morphology Step Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 7VNV PDB ID: 7VNV

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	20	AA_2MG10U11:A24C25_AA	-0.474	-1.5	3.227	-1.187	5.754	34.193	-3.357	0.622	2.957	9.697	2.001	34.68
1	7	AA_5MC49U50:A64G65_AA	-0.128	-1.871	3.369	-2.556	4.338	32.248	-4.08	-0.213	3.098	7.751	4.567	32.628
1	25	AA_7SN15C16:G595MC48_AA	-1.284	-1.327	3.314	-1.143	-12.039	-163.793	0.695	-0.651	3.292	6.08	-0.577	-163.883
1	24	AA_A147SN15:5MC484SU8_AA	2.176	-3.076	3.059	7.499	7.95	-69.415	2.408	2.146	3.131	-6.938	6.544	-70.164
1	13	AA_A38G39:C31OMC32_AA	0.174	-1.115	3.274	-5.662	6.212	51.003	-1.692	-0.576	3.093	7.158	6.524	51.645
1	19	AA_A442MG10:C25M2G26_AA	-2.396	-3.174	3.236	16.663	7.043	50.94	-3.866	3.501	1.993	7.909	-18.711	53.854
1	4	AA_C4C5:G68G69_AA	0.346	-2.065	3.046	1.357	2.241	25.702	-5.185	-0.432	2.873	5.02	-3.041	25.833
1	5	AA_C5G7:C66G68_AA	-0.461	-3.647	6.44	-0.263	15.57	61.66	-4.74	0.417	5.475	14.937	0.252	63.408
1	22	AA_C12PSU13:G22G23_AA	1.561	-1.829	3.006	4.117	2.178	29.374	-3.989	-2.238	3.051	4.261	-8.054	29.733
1	16	AA_C41G42:C28G29_AA	-0.06	-1.848	3.27	-0.089	8.352	29.112	-5.1	0.097	2.65	16.198	0.173	30.262
1	1	AA_G1G2:C71C72_AA	-0.561	-2.021	3.249	0.099	4.685	31.378	-4.515	1.043	2.922	8.603	-0.181	31.718
1	2	AA_G2G3:C70C71_AA	0.136	-1.649	3.162	-0.644	5.54	32.231	-3.816	-0.345	2.843	9.886	1.15	32.698
1	3	AA_G3C4:G69C70_AA	0.523	-1.611	3.174	0.139	4.067	33.128	-3.441	-0.89	2.963	7.1	-0.242	33.37
1	6	AA_G75MC49:G65C66_AA	-0.652	-1.53	3.148	0.057	2.873	36.253	-2.829	1.052	3.021	4.608	-0.091	36.363
1	14	AA_G39G40:C30C31_AA	-0.172	-1.782	3.245	2.263	7.545	32.556	-4.253	0.646	2.756	13.219	-3.964	33.47
1	15	AA_G40C41:G29C30_AA	0.077	-1.725	3.317	-0.569	3.512	33.167	-3.582	-0.227	3.122	6.129	0.994	33.352
1	17	AA_G42G43:C27C28_AA	0.544	-1.655	3.208	2.594	5.578	32.933	-3.742	-0.54	2.93	9.733	-4.527	33.487
1	18	AA_G43A44:M2G26C27_AA	-0.433	-1.93	3.526	8.215	9.503	38.169	-3.898	1.567	2.836	14.074	-12.167	40.109
1	9	AA_G51G52:C62C63_AA	0.488	-2.058	3.349	1.44	6.354	31.759	-4.771	-0.63	2.912	11.46	-2.597	32.403
1	10	AA_G52G53:C61C62_AA	0.698	-2.116	3.574	4.587	4.637	32.486	-4.543	-0.403	3.313	8.185	-8.097	33.117
1	11	AA_G53SUR54:1MA58C61_AA	-2.341	-2.567	3.174	0.78	0.985	88.257	-1.863	1.697	3.134	0.707	-0.56	88.264
1	23	AA_PSU13A14:4SU8G22_AA	-1.114	-1.053	3.403	0.265	-1.518	63.31	-0.933	1.073	3.421	-1.446	-0.253	63.327
1	12	AA_SUR54PSU55:G181MA58_AA	1.963	-1.888	3.566	7.79	2.53	41.099	-2.94	-1.828	3.743	3.561	-10.965	41.873
1	21	AA_U11C12:G23A24_AA	-0.286	-1.234	3.108	2.398	6.19	34.352	-2.909	0.808	2.824	10.361	-4.013	34.969
1	8	AA_U50G51:C63A64_AA	-0.34	-1.564	3.145	1.02	8.192	30.194	-4.295	0.804	2.627	15.369	-1.914	31.277
1	45	BB_2MG10U11:A24C25_BB	-0.775	-1.387	3.251	-1.076	7.73	35.125	-3.298	1.11	2.912	12.617	1.756	35.955
1	32	BB_5MC49U50:A64G65_BB	-0.069	-1.839	3.288	-2.395	4.628	33.643	-3.857	-0.251	3.014	7.937	4.108	34.033
1	50	BB_7SN15C16:G595MC48_BB	-1.235	-1.17	2.963	2.132	-13.486	-159.143	0.627	-0.623	2.941	6.855	1.084	-159.292
1	49	BB_A147SN15:5MC484SU8_BB	1.904	-3.266	3.626	9.276	13.038	-71.893	2.247	1.938	3.855	-10.972	7.806	-73.417
1	38	BB_A38G39:C31OMC32_BB	-0.216	-1.558	3.283	0.513	5.206	46.741	-2.373	0.312	3.1	6.537	-0.645	47.016
1	44	BB_A442MG10:C25M2G26_BB	-1.843	-3.465	3.546	22.271	8.8	50.689	-4.168	3.138	2.049	9.685	-24.51	55.721
1	29	BB_C4C5:G68G69_BB	0.329	-1.976	3.125	0.188	4.729	30.162	-4.609	-0.59	2.792	9.017	-0.359	30.522
1	30	BB_C5G7:C66G68_BB	-0.451	-3.784	6.149	-1.414	17.818	62.042	-4.884	0.319	5.019	16.916	1.343	64.318
1	47	BB_C12PSU13:G22G23_BB	1.691	-1.752	2.972	2.835	3.844	26.651	-4.619	-2.968	2.857	8.255	-6.089	27.068
1	41	BB_C41G42:C28G29_BB	0.322	-1.694	3.252	1.778	12.076	27.653	-5.451	-0.296	2.339	23.847	-3.512	30.179
1	26	BB_G1G2:C71C72_BB	-0.803	-1.569	3.296	-0.233	4.955	31.024	-3.802	1.441	3.021	9.189	0.432	31.409
1	27	BB_G2G3:C70C71_BB	0.178	-1.773	3.154	-1.326	5.988	30.725	-4.316	-0.558	2.757	11.162	2.471	31.317
1	28	BB_G3C4:G69C70_BB	0.084	-1.454	3.118	-0.499	5.492	32.523	-3.417	-0.226	2.84	9.718	0.883	32.975
1	31	BB_G75MC49:G65C66_BB	-0.849	-1.377	3.128	0.813	3.834	36.497	-2.675	1.452	2.954	6.1	-1.294	36.7
1	39	BB_G39G40:C30C31_BB	0.263	-1.976	3.338	1.358	6.438	32.048	-4.583	-0.24	2.905	11.509	-2.428	32.699
1	40	BB_G40C41:G29C30_BB	0.217	-1.389	3.229	2.924	3.393	34.344	-2.84	0.071	3.089	5.717	-4.925	34.626
1	42	BB_G42G43:C27C28_BB	0.614	-1.889	3.227	-1.204	4.973	30.226	-4.493	-1.384	2.861	9.451	2.289	30.646
1	43	BB_G43A44:M2G26C27_BB	-1.193	-2.474	3.597	8.054	12.883	39.054	-4.757	2.478	2.417	18.445	-11.531	41.798
1	34	BB_G51G52:C62C63_BB	0.098	-1.643	3.329	-0.18	6.912	30.845	-4.253	-0.212	2.901	12.794	0.334	31.593
1	35	BB_G52G53:C61C62_BB	0.682	-2.021	3.393	0.609	3.361	32.894	-4.123	-1.094	3.188	5.915	-1.072	33.066
1	36	BB_G53SUR54:1MA58C61_BB	-2.242	-2.519	3.133	2.305	1.639	89.882	-1.814	1.631	3.051	1.16	-1.631	89.917
1	48	BB_PSU13A14:4SU8G22_BB	-0.897	-1.068	3.319	1.808	-2.524	71.618	-0.826	0.828	3.33	-2.156	-1.545	71.677
1	37	BB_SUR54PSU55:G181MA58_BB	2.108	-1.897	3.422	9.154	1.209	40.972	-2.789	-1.889	3.733	1.701	-12.881	41.956
1	46	BB_U11C12:G23A24_BB	-0.062	-1.085	3.138	-0.047	4.146	32.736	-2.572	0.101	2.982	7.319	0.083	32.99
1	33	BB_U50G51:C63A64_BB	0.126	-1.611	3.221	5.626	9.727	30.667	-4.419	0.673	2.585	17.664	-10.216	32.614

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.