A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: 7VNV  PDB ID: 7VNV 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
120AA_2MG10U11:A24C25_AA-0.474-1.53.227-1.1875.75434.193-3.3570.6222.9579.6972.00134.68
17AA_5MC49U50:A64G65_AA-0.128-1.8713.369-2.5564.33832.248-4.08-0.2133.0987.7514.56732.628
125AA_7SN15C16:G595MC48_AA-1.284-1.3273.314-1.143-12.039-163.7930.695-0.6513.2926.08-0.577-163.883
124AA_A147SN15:5MC484SU8_AA2.176-3.0763.0597.4997.95-69.4152.4082.1463.131-6.9386.544-70.164
113AA_A38G39:C31OMC32_AA0.174-1.1153.274-5.6626.21251.003-1.692-0.5763.0937.1586.52451.645
119AA_A442MG10:C25M2G26_AA-2.396-3.1743.23616.6637.04350.94-3.8663.5011.9937.909-18.71153.854
14AA_C4C5:G68G69_AA0.346-2.0653.0461.3572.24125.702-5.185-0.4322.8735.02-3.04125.833
15AA_C5G7:C66G68_AA-0.461-3.6476.44-0.26315.5761.66-4.740.4175.47514.9370.25263.408
122AA_C12PSU13:G22G23_AA1.561-1.8293.0064.1172.17829.374-3.989-2.2383.0514.261-8.05429.733
116AA_C41G42:C28G29_AA-0.06-1.8483.27-0.0898.35229.112-5.10.0972.6516.1980.17330.262
11AA_G1G2:C71C72_AA-0.561-2.0213.2490.0994.68531.378-4.5151.0432.9228.603-0.18131.718
12AA_G2G3:C70C71_AA0.136-1.6493.162-0.6445.5432.231-3.816-0.3452.8439.8861.1532.698
13AA_G3C4:G69C70_AA0.523-1.6113.1740.1394.06733.128-3.441-0.892.9637.1-0.24233.37
16AA_G75MC49:G65C66_AA-0.652-1.533.1480.0572.87336.253-2.8291.0523.0214.608-0.09136.363
114AA_G39G40:C30C31_AA-0.172-1.7823.2452.2637.54532.556-4.2530.6462.75613.219-3.96433.47
115AA_G40C41:G29C30_AA0.077-1.7253.317-0.5693.51233.167-3.582-0.2273.1226.1290.99433.352
117AA_G42G43:C27C28_AA0.544-1.6553.2082.5945.57832.933-3.742-0.542.939.733-4.52733.487
118AA_G43A44:M2G26C27_AA-0.433-1.933.5268.2159.50338.169-3.8981.5672.83614.074-12.16740.109
19AA_G51G52:C62C63_AA0.488-2.0583.3491.446.35431.759-4.771-0.632.91211.46-2.59732.403
110AA_G52G53:C61C62_AA0.698-2.1163.5744.5874.63732.486-4.543-0.4033.3138.185-8.09733.117
111AA_G53SUR54:1MA58C61_AA-2.341-2.5673.1740.780.98588.257-1.8631.6973.1340.707-0.5688.264
123AA_PSU13A14:4SU8G22_AA-1.114-1.0533.4030.265-1.51863.31-0.9331.0733.421-1.446-0.25363.327
112AA_SUR54PSU55:G181MA58_AA1.963-1.8883.5667.792.5341.099-2.94-1.8283.7433.561-10.96541.873
121AA_U11C12:G23A24_AA-0.286-1.2343.1082.3986.1934.352-2.9090.8082.82410.361-4.01334.969
18AA_U50G51:C63A64_AA-0.34-1.5643.1451.028.19230.194-4.2950.8042.62715.369-1.91431.277
145BB_2MG10U11:A24C25_BB-0.775-1.3873.251-1.0767.7335.125-3.2981.112.91212.6171.75635.955
132BB_5MC49U50:A64G65_BB-0.069-1.8393.288-2.3954.62833.643-3.857-0.2513.0147.9374.10834.033
150BB_7SN15C16:G595MC48_BB-1.235-1.172.9632.132-13.486-159.1430.627-0.6232.9416.8551.084-159.292
149BB_A147SN15:5MC484SU8_BB1.904-3.2663.6269.27613.038-71.8932.2471.9383.855-10.9727.806-73.417
138BB_A38G39:C31OMC32_BB-0.216-1.5583.2830.5135.20646.741-2.3730.3123.16.537-0.64547.016
144BB_A442MG10:C25M2G26_BB-1.843-3.4653.54622.2718.850.689-4.1683.1382.0499.685-24.5155.721
129BB_C4C5:G68G69_BB0.329-1.9763.1250.1884.72930.162-4.609-0.592.7929.017-0.35930.522
130BB_C5G7:C66G68_BB-0.451-3.7846.149-1.41417.81862.042-4.8840.3195.01916.9161.34364.318
147BB_C12PSU13:G22G23_BB1.691-1.7522.9722.8353.84426.651-4.619-2.9682.8578.255-6.08927.068
141BB_C41G42:C28G29_BB0.322-1.6943.2521.77812.07627.653-5.451-0.2962.33923.847-3.51230.179
126BB_G1G2:C71C72_BB-0.803-1.5693.296-0.2334.95531.024-3.8021.4413.0219.1890.43231.409
127BB_G2G3:C70C71_BB0.178-1.7733.154-1.3265.98830.725-4.316-0.5582.75711.1622.47131.317
128BB_G3C4:G69C70_BB0.084-1.4543.118-0.4995.49232.523-3.417-0.2262.849.7180.88332.975
131BB_G75MC49:G65C66_BB-0.849-1.3773.1280.8133.83436.497-2.6751.4522.9546.1-1.29436.7
139BB_G39G40:C30C31_BB0.263-1.9763.3381.3586.43832.048-4.583-0.242.90511.509-2.42832.699
140BB_G40C41:G29C30_BB0.217-1.3893.2292.9243.39334.344-2.840.0713.0895.717-4.92534.626
142BB_G42G43:C27C28_BB0.614-1.8893.227-1.2044.97330.226-4.493-1.3842.8619.4512.28930.646
143BB_G43A44:M2G26C27_BB-1.193-2.4743.5978.05412.88339.054-4.7572.4782.41718.445-11.53141.798
134BB_G51G52:C62C63_BB0.098-1.6433.329-0.186.91230.845-4.253-0.2122.90112.7940.33431.593
135BB_G52G53:C61C62_BB0.682-2.0213.3930.6093.36132.894-4.123-1.0943.1885.915-1.07233.066
136BB_G53SUR54:1MA58C61_BB-2.242-2.5193.1332.3051.63989.882-1.8141.6313.0511.16-1.63189.917
148BB_PSU13A14:4SU8G22_BB-0.897-1.0683.3191.808-2.52471.618-0.8260.8283.33-2.156-1.54571.677
137BB_SUR54PSU55:G181MA58_BB2.108-1.8973.4229.1541.20940.972-2.789-1.8893.7331.701-12.88141.956
146BB_U11C12:G23A24_BB-0.062-1.0853.138-0.0474.14632.736-2.5720.1012.9827.3190.08332.99
133BB_U50G51:C63A64_BB0.126-1.6113.2215.6269.72730.667-4.4190.6732.58517.664-10.21632.614

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.