A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: 7VNW  PDB ID: 7VNW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
121A_2MG10:C25_A-1.1130.0040.109-7.295-7.9915.321
17A_5MC49:G65_A0.175-0.2590.0125.232-2.5650.313
126A_7SN15:5MC48_A0.0483.7410.3823.7717.461162.97
125A_A14:U8_A-4.516-1.9530.6831.5166.102-97.419
114A_A38:OMC32_A-4.704-0.9340.0697.78-2.7951.257
120A_A44:M2G26_A0.9111.475-0.453-27.142-19.114-27.823
14A_C4:G69_A-0.030.0070.0571.175-5.947-0.209
15A_C5:G68_A-0.253-0.3050.0167.429-14.3471.796
123A_C12:G23_A0.5080.2240.305-8.525-1.8958.319
117A_C41:G29_A-0.139-0.3210.11-1.362-6.991-1.874
11A_G1:C72_A0.0-0.0790.01-5.809-3.0961.272
12A_G2:C71_A-0.202-0.1-0.142-5.774-8.886-0.264
13A_G3:C70_A0.139-0.107-0.02-11.148-14.6830.374
16A_G7:C66_A0.043-0.3530.075-6.562-9.731-1.099
127A_G19:OMC56_A-0.5-0.497-0.098-23.65-25.825-5.657
115A_G39:C31_A-0.1350.0110.0543.579-6.5243.629
116A_G40:C30_A-0.048-0.067-0.355-1.981-10.9553.298
118A_G42:C28_A-0.592-0.362-0.038-5.763-14.172-3.031
119A_G43:C27_A0.151-0.064-0.174-14.491-16.424-1.932
19A_G51:C63_A-0.304-0.4-0.0210.526-5.059-6.75
110A_G52:C62_A-0.255-0.109-0.245-4.445-3.2114.293
111A_G53:C61_A0.09-0.078-0.766-20.476-10.559-0.682
124A_PSU13:G22_A2.739-0.5590.408-2.218-6.993-2.533
113A_PSU55:G18_A0.75-5.5850.07921.3596.532-92.27
122A_U11:A24_A-0.452-0.2250.236-11.932-2.4473.271
18A_U50:A64_A0.18-0.177-0.3447.418-8.238-0.806
112A_U54:1MA58_A3.991-1.3340.75-4.24710.89-109.031
148B_2MG10:C25_B-0.593-0.342-0.148-7.785-0.89-2.364
134B_5MC49:G65_B-0.107-0.3950.1621.828-9.0292.129
153B_7SN15:5MC48_B0.0743.6150.057-2.373-3.984153.283
152B_A14:U8_B-4.197-2.1770.9667.08311.36-98.527
141B_A38:OMC32_B-5.063-0.7130.4084.6367.189-3.323
147B_A44:M2G26_B-0.0961.726-0.442-28.078-18.108-19.815
131B_C4:G69_B-0.244-0.1580.2552.7512.2681.394
132B_C5:G68_B-0.517-0.033-0.1297.446-12.054-0.201
150B_C12:G23_B0.357-0.210.516-4.8193.723-1.735
154B_C16:G59_B-3.762-7.9691.49838.019-23.06-156.534
144B_C41:G29_B0.3120.208-0.427-7.7591.0369.758
128B_G1:C72_B-0.994-0.51-0.231-8.188-8.015-4.148
129B_G2:C71_B-0.397-0.140.113-2.104-0.478-9.493
130B_G3:C70_B0.636-0.050.057-0.775-8.178-1.645
133B_G7:C66_B0.155-0.0020.3691.426-10.5543.926
155B_G19:OMC56_B-1.068-0.0440.478-25.508-27.74812.228
142B_G39:C31_B-1.515-0.108-0.45911.352-11.936-0.43
143B_G40:C30_B0.673-0.171-0.769-4.565-7.643.633
145B_G42:C28_B-0.764-0.1710.034-5.422-0.549-1.014
146B_G43:C27_B-0.167-0.061-0.278-14.874-20.8354.014
136B_G51:C63_B1.162-0.1460.312-2.473-3.9091.712
137B_G52:C62_B0.659-0.177-0.115-5.731-4.9521.584
138B_G53:C61_B-0.286-0.039-0.062-17.514-11.381-2.257
151B_PSU13:G22_B1.516-0.6330.317-2.415-0.694-5.157
140B_PSU55:G18_B0.576-4.7850.22116.17710.905-101.42
149B_U11:A24_B0.413-0.197-0.062-10.768-12.3675.254
135B_U50:A64_B0.132-0.3010.198-6.132-5.2964.672
139B_U54:1MA58_B4.157-1.638-0.312-2.8051.802-105.836

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.