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NDB ID: 7JJF  PDB ID: 7JJF 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
7JJF|1|A|A|547JJF|1|A|A|540BPh
7JJF|1|A|A|547JJF|1|A|A|78s53n2BP
7JJF|1|A|A|547JJF|1|A|C|79ntHH6BPh
7JJF|1|A|A|547JJF|1|A|U|53s33
7JJF|1|A|A|547JJF|1|A|U|56s55
7JJF|1|A|A|577JJF|1|A|A|570BPh
7JJF|1|A|A|577JJF|1|A|A|78s55
7JJF|1|A|A|577JJF|1|A|C|58s35
7JJF|1|A|A|577JJF|1|A|G|77tHS
7JJF|1|A|A|577JJF|1|A|U|56s53
7JJF|1|A|A|757JJF|1|A|A|750BPh
7JJF|1|A|A|757JJF|1|A|G|59tHS
7JJF|1|A|A|757JJF|1|A|G|76s35
7JJF|1|A|A|787JJF|1|A|A|54s35
7JJF|1|A|A|787JJF|1|A|A|57s55
7JJF|1|A|A|787JJF|1|A|A|78n0BP
7JJF|1|A|A|787JJF|1|A|C|79s35
7JJF|1|A|A|787JJF|1|A|U|56tHW
7JJF|1|A|A|837JJF|1|A|A|830BPh
7JJF|1|A|A|837JJF|1|A|C|51ns55
7JJF|1|A|A|837JJF|1|A|G|82s53
7JJF|1|A|A|837JJF|1|A|G|84s35
7JJF|1|A|A|837JJF|1|A|U|50||AcWW
7JJF|1|A|C|49||A7JJF|1|A|C|49||A0BPh
7JJF|1|A|C|49||A7JJF|1|A|G|48s53
7JJF|1|A|C|49||A7JJF|1|A|G|84cWW
7JJF|1|A|C|49||A7JJF|1|A|U|50||As35
7JJF|1|A|C|517JJF|1|A|A|83ns55
7JJF|1|A|C|517JJF|1|A|C|510BPh
7JJF|1|A|C|517JJF|1|A|C|52s35
7JJF|1|A|C|517JJF|1|A|G|82cWW
7JJF|1|A|C|517JJF|1|A|U|50||As53
7JJF|1|A|C|527JJF|1|A|C|51s53
7JJF|1|A|C|527JJF|1|A|C|520BPh
7JJF|1|A|C|527JJF|1|A|G|81cWW
7JJF|1|A|C|527JJF|1|A|G|82s55
7JJF|1|A|C|527JJF|1|A|U|53s35
7JJF|1|A|C|587JJF|1|A|A|57s53n9BP
7JJF|1|A|C|587JJF|1|A|C|580BPh
7JJF|1|A|C|587JJF|1|A|G|59s35
7JJF|1|A|C|587JJF|1|A|G|76cWW
7JJF|1|A|C|587JJF|1|A|G|77s55
7JJF|1|A|C|797JJF|1|A|A|54ntHH
7JJF|1|A|C|797JJF|1|A|A|78s53
7JJF|1|A|C|797JJF|1|A|C|790BPh
7JJF|1|A|C|797JJF|1|A|C|80s35
7JJF|1|A|C|807JJF|1|A|C|79s53
7JJF|1|A|C|807JJF|1|A|C|800BPh
7JJF|1|A|C|807JJF|1|A|G|81s35
7JJF|1|A|C|807JJF|1|A|U|53ntHS
7JJF|1|A|G|487JJF|1|A|C|49||As35
7JJF|1|A|G|487JJF|1|A|G|480BPh
7JJF|1|A|G|487JJF|1|A|G|86s55
7JJF|1|A|G|487JJF|1|A|U|85cWW
7JJF|1|A|G|557JJF|1|A|A|784BPh
7JJF|1|A|G|557JJF|1|A|G|77s33
7JJF|1|A|G|557JJF|1|A|U|56cSH
7JJF|1|A|G|597JJF|1|A|A|75tSH3BPh
7JJF|1|A|G|597JJF|1|A|C|58s53
7JJF|1|A|G|597JJF|1|A|G|590BPh
7JJF|1|A|G|597JJF|1|A|G|76s55
7JJF|1|A|G|767JJF|1|A|A|75s53
7JJF|1|A|G|767JJF|1|A|C|58cWW
7JJF|1|A|G|767JJF|1|A|G|59s55
7JJF|1|A|G|767JJF|1|A|G|760BPh
7JJF|1|A|G|767JJF|1|A|G|77s35
7JJF|1|A|G|777JJF|1|A|A|57tSH
7JJF|1|A|G|777JJF|1|A|C|58s55
7JJF|1|A|G|777JJF|1|A|G|55s33
7JJF|1|A|G|777JJF|1|A|G|76s53
7JJF|1|A|G|777JJF|1|A|G|770BPh
7JJF|1|A|G|777JJF|1|A|U|56s334BPh
7JJF|1|A|G|817JJF|1|A|C|52cWW
7JJF|1|A|G|817JJF|1|A|C|80s53
7JJF|1|A|G|817JJF|1|A|G|810BPh
7JJF|1|A|G|817JJF|1|A|G|82s35
7JJF|1|A|G|827JJF|1|A|A|83s35
7JJF|1|A|G|827JJF|1|A|C|51cWW
7JJF|1|A|G|827JJF|1|A|C|52s55
7JJF|1|A|G|827JJF|1|A|G|81s53
7JJF|1|A|G|827JJF|1|A|G|820BPh
7JJF|1|A|G|847JJF|1|A|A|83s53
7JJF|1|A|G|847JJF|1|A|C|49||AcWW
7JJF|1|A|G|847JJF|1|A|G|840BPh
7JJF|1|A|G|847JJF|1|A|U|50||As55
7JJF|1|A|G|847JJF|1|A|U|85s35
7JJF|1|A|G|867JJF|1|A|G|48s55
7JJF|1|A|G|867JJF|1|A|G|860BPh
7JJF|1|A|G|867JJF|1|A|U|85s53
7JJF|1|A|U|477JJF|1|A|U|470BPh
7JJF|1|A|U|50||A7JJF|1|A|A|83cWW
7JJF|1|A|U|50||A7JJF|1|A|C|49||As53
7JJF|1|A|U|50||A7JJF|1|A|C|51s35
7JJF|1|A|U|50||A7JJF|1|A|G|84s55
7JJF|1|A|U|50||A7JJF|1|A|U|50||A0BPh
7JJF|1|A|U|537JJF|1|A|A|54s33
7JJF|1|A|U|537JJF|1|A|C|52s53
7JJF|1|A|U|537JJF|1|A|C|80ntSH
7JJF|1|A|U|537JJF|1|A|U|530BPh
7JJF|1|A|U|567JJF|1|A|A|54s55
7JJF|1|A|U|567JJF|1|A|A|57s35
7JJF|1|A|U|567JJF|1|A|A|78tWH
7JJF|1|A|U|567JJF|1|A|G|55cHS
7JJF|1|A|U|567JJF|1|A|G|77s33
7JJF|1|A|U|567JJF|1|A|U|560BPh
7JJF|1|A|U|857JJF|1|A|G|48cWW
7JJF|1|A|U|857JJF|1|A|G|84s53
7JJF|1|A|U|857JJF|1|A|G|86s35
7JJF|1|A|U|857JJF|1|A|U|850BPh


Base-PairsCount (10)Relative Frequency
cWW60.600
tWH10.100
cHS10.100
tHS20.200
Base-PhosphateCount (27)Relative Frequency
3BPh10.037
4BPh20.074
6BPh10.037
0BPh230.852
Base-StackingCount (16)Relative Frequency
s3330.188
s5360.375
s5570.438

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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