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NDB ID: 7KUP  PDB ID: 7KUP 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
7KUP|1|A|A|137KUP|1|A|A|130BPh
7KUP|1|A|A|137KUP|1|A|A|14s35
7KUP|1|A|A|137KUP|1|A|U|12s53
7KUP|1|A|A|137KUP|1|B|A|13s55
7KUP|1|A|A|137KUP|1|B|U|12cWW
7KUP|1|A|A|147KUP|1|A|A|13s53
7KUP|1|A|A|147KUP|1|A|A|140BPh
7KUP|1|A|A|147KUP|1|A|G|15s35
7KUP|1|A|A|147KUP|1|B|U|11cWW
7KUP|1|A|A|147KUP|1|B|U|12s55
7KUP|1|A|A|97KUP|1|A|A|90BPh
7KUP|1|A|A|97KUP|1|A|C|10s35
7KUP|1|A|A|97KUP|1|B|U|16cWW
7KUP|1|A|C|107KUP|1|A|A|9s53
7KUP|1|A|C|107KUP|1|A|C|100BPh
7KUP|1|A|C|107KUP|1|A|U|11s35
7KUP|1|A|C|107KUP|1|B|G|15cWW
7KUP|1|A|C|177KUP|1|A|C|170BPh
7KUP|1|A|C|177KUP|1|A|U|16s53
7KUP|1|A|G|157KUP|1|A|A|14s53
7KUP|1|A|G|157KUP|1|A|G|150BPh
7KUP|1|A|G|157KUP|1|A|U|16s35
7KUP|1|A|G|157KUP|1|B|C|10cWW
7KUP|1|A|G|157KUP|1|B|U|11s55
7KUP|1|A|U|117KUP|1|A|C|10s53
7KUP|1|A|U|117KUP|1|A|U|110BPh
7KUP|1|A|U|117KUP|1|A|U|12s35
7KUP|1|A|U|117KUP|1|B|A|14cWW
7KUP|1|A|U|117KUP|1|B|G|15s55
7KUP|1|A|U|127KUP|1|A|A|13s35
7KUP|1|A|U|127KUP|1|A|U|11s53
7KUP|1|A|U|127KUP|1|A|U|120BPh
7KUP|1|A|U|127KUP|1|B|A|13cWW
7KUP|1|A|U|127KUP|1|B|A|14s55
7KUP|1|A|U|167KUP|1|A|C|17s35
7KUP|1|A|U|167KUP|1|A|G|15s53
7KUP|1|A|U|167KUP|1|A|U|160BPh
7KUP|1|A|U|167KUP|1|B|A|9cWW
7KUP|1|B|A|137KUP|1|A|A|13s55
7KUP|1|B|A|137KUP|1|A|U|12cWW
7KUP|1|B|A|137KUP|1|B|A|130BPh
7KUP|1|B|A|137KUP|1|B|A|14s35
7KUP|1|B|A|137KUP|1|B|U|12s53
7KUP|1|B|A|147KUP|1|A|U|11cWW
7KUP|1|B|A|147KUP|1|A|U|12s55
7KUP|1|B|A|147KUP|1|B|A|13s53
7KUP|1|B|A|147KUP|1|B|A|140BPh
7KUP|1|B|A|147KUP|1|B|G|15s35
7KUP|1|B|A|97KUP|1|A|U|16cWW
7KUP|1|B|A|97KUP|1|B|A|90BPh
7KUP|1|B|A|97KUP|1|B|C|10s35
7KUP|1|B|C|107KUP|1|A|G|15cWW
7KUP|1|B|C|107KUP|1|B|A|9s53
7KUP|1|B|C|107KUP|1|B|C|100BPh
7KUP|1|B|C|107KUP|1|B|U|11s35
7KUP|1|B|C|177KUP|1|B|C|170BPh
7KUP|1|B|C|177KUP|1|B|U|16s53
7KUP|1|B|G|157KUP|1|A|C|10cWW
7KUP|1|B|G|157KUP|1|A|U|11s55
7KUP|1|B|G|157KUP|1|B|A|14s53
7KUP|1|B|G|157KUP|1|B|G|150BPh
7KUP|1|B|G|157KUP|1|B|U|16s35
7KUP|1|B|U|117KUP|1|A|A|14cWW
7KUP|1|B|U|117KUP|1|A|G|15s55
7KUP|1|B|U|117KUP|1|B|C|10s53
7KUP|1|B|U|117KUP|1|B|U|110BPh
7KUP|1|B|U|117KUP|1|B|U|12s35
7KUP|1|B|U|127KUP|1|A|A|13cWW
7KUP|1|B|U|127KUP|1|A|A|14s55
7KUP|1|B|U|127KUP|1|B|A|13s35
7KUP|1|B|U|127KUP|1|B|U|11s53
7KUP|1|B|U|127KUP|1|B|U|120BPh
7KUP|1|B|U|167KUP|1|A|A|9cWW
7KUP|1|B|U|167KUP|1|B|C|17s35
7KUP|1|B|U|167KUP|1|B|G|15s53
7KUP|1|B|U|167KUP|1|B|U|160BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (18)Relative Frequency
0BPh181.000
Base-StackingCount (9)Relative Frequency
s5340.444
s5550.556

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)