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NDB ID: 7LNF  PDB ID: 7LNF 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
7LNF|1|A|A|107LNF|1|A|A|100BPh
7LNF|1|A|A|107LNF|1|A|A|9s53
7LNF|1|A|A|107LNF|1|A|G|11s35
7LNF|1|A|A|107LNF|1|B|U|7cWW
7LNF|1|A|A|107LNF|1|B|U|8s55
7LNF|1|A|A|57LNF|1|A|A|50BPh
7LNF|1|A|A|57LNF|1|A|C|6s35
7LNF|1|A|A|57LNF|1|B|U|12cWW
7LNF|1|A|A|97LNF|1|A|A|10s35
7LNF|1|A|A|97LNF|1|A|A|90BPh
7LNF|1|A|A|97LNF|1|A|U|8s53
7LNF|1|A|A|97LNF|1|B|A|9s55
7LNF|1|A|A|97LNF|1|B|U|8cWW
7LNF|1|A|C|137LNF|1|A|C|130BPh
7LNF|1|A|C|137LNF|1|A|U|12s53
7LNF|1|A|C|67LNF|1|A|A|5s53
7LNF|1|A|C|67LNF|1|A|C|60BPh
7LNF|1|A|C|67LNF|1|A|U|7s35
7LNF|1|A|C|67LNF|1|B|G|11cWW
7LNF|1|A|G|117LNF|1|A|A|10s53
7LNF|1|A|G|117LNF|1|A|G|110BPh
7LNF|1|A|G|117LNF|1|A|U|12s35
7LNF|1|A|G|117LNF|1|B|C|6cWW
7LNF|1|A|G|117LNF|1|B|U|7s55
7LNF|1|A|U|127LNF|1|A|C|13s35
7LNF|1|A|U|127LNF|1|A|G|11s53
7LNF|1|A|U|127LNF|1|A|U|120BPh
7LNF|1|A|U|127LNF|1|B|A|5cWW
7LNF|1|A|U|77LNF|1|A|C|6s53
7LNF|1|A|U|77LNF|1|A|U|70BPh
7LNF|1|A|U|77LNF|1|A|U|8s35
7LNF|1|A|U|77LNF|1|B|A|10cWW
7LNF|1|A|U|77LNF|1|B|G|11s55
7LNF|1|A|U|87LNF|1|A|A|9s35
7LNF|1|A|U|87LNF|1|A|U|7s53
7LNF|1|A|U|87LNF|1|A|U|80BPh
7LNF|1|A|U|87LNF|1|B|A|10s55
7LNF|1|A|U|87LNF|1|B|A|9cWW
7LNF|1|B|A|107LNF|1|A|U|7cWW
7LNF|1|B|A|107LNF|1|A|U|8s55
7LNF|1|B|A|107LNF|1|B|A|100BPh
7LNF|1|B|A|107LNF|1|B|A|9s53
7LNF|1|B|A|107LNF|1|B|G|11s35
7LNF|1|B|A|57LNF|1|A|U|12cWW
7LNF|1|B|A|57LNF|1|B|A|50BPh
7LNF|1|B|A|57LNF|1|B|C|6s35
7LNF|1|B|A|97LNF|1|A|A|9s55
7LNF|1|B|A|97LNF|1|A|U|8cWW
7LNF|1|B|A|97LNF|1|B|A|10s35
7LNF|1|B|A|97LNF|1|B|A|90BPh
7LNF|1|B|A|97LNF|1|B|U|8s53
7LNF|1|B|C|137LNF|1|B|C|130BPh
7LNF|1|B|C|137LNF|1|B|U|12s53
7LNF|1|B|C|67LNF|1|A|G|11cWW
7LNF|1|B|C|67LNF|1|B|A|5s53
7LNF|1|B|C|67LNF|1|B|C|60BPh
7LNF|1|B|C|67LNF|1|B|U|7s35
7LNF|1|B|G|117LNF|1|A|C|6cWW
7LNF|1|B|G|117LNF|1|A|U|7s55
7LNF|1|B|G|117LNF|1|B|A|10s53
7LNF|1|B|G|117LNF|1|B|G|110BPh
7LNF|1|B|G|117LNF|1|B|U|12s35
7LNF|1|B|U|127LNF|1|A|A|5cWW
7LNF|1|B|U|127LNF|1|B|C|13s35
7LNF|1|B|U|127LNF|1|B|G|11s53
7LNF|1|B|U|127LNF|1|B|U|120BPh
7LNF|1|B|U|77LNF|1|A|A|10cWW
7LNF|1|B|U|77LNF|1|A|G|11s55
7LNF|1|B|U|77LNF|1|B|C|6s53
7LNF|1|B|U|77LNF|1|B|U|70BPh
7LNF|1|B|U|77LNF|1|B|U|8s35
7LNF|1|B|U|87LNF|1|A|A|10s55
7LNF|1|B|U|87LNF|1|A|A|9cWW
7LNF|1|B|U|87LNF|1|B|A|9s35
7LNF|1|B|U|87LNF|1|B|U|7s53
7LNF|1|B|U|87LNF|1|B|U|80BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (18)Relative Frequency
0BPh181.000
Base-StackingCount (11)Relative Frequency
s5360.545
s5550.455

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)