8ICA: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166

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NDB ID: PDE089 PDB ID: 8ICA

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	T_DA2:DT6_P	0.075	-0.098	0.033	3.019	-13.451	8.786
1	5	T_DA5:DT3_P	0.679	-0.575	0.05	3.333	-14.19	3.219
1	7	T_DA7:DT1_P	-0.645	-0.452	0.169	16.817	-8.988	-1.827
1	1	T_DC1:DG7_P	1.136	-0.1	-0.747	2.778	-7.369	6.568
1	6	T_DG6:DC2_P	-0.896	-0.85	-0.153	6.892	-17.671	-5.465
1	3	T_DT3:DA5_P	-0.307	-0.178	0.391	2.849	-21.677	11.791
1	4	T_DT4:DA4_P	-0.049	-0.533	0.19	-0.363	-15.428	10.357

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.