A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166
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NDB ID: PDE089  PDB ID: 8ICA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA2:DT6_P0.075-0.0980.0333.019-13.4518.786
15T_DA5:DT3_P0.679-0.5750.053.333-14.193.219
17T_DA7:DT1_P-0.645-0.4520.16916.817-8.988-1.827
11T_DC1:DG7_P1.136-0.1-0.7472.778-7.3696.568
16T_DG6:DC2_P-0.896-0.85-0.1536.892-17.671-5.465
13T_DT3:DA5_P-0.307-0.1780.3912.849-21.67711.791
14T_DT4:DA4_P-0.049-0.5330.19-0.363-15.42810.357

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.