A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PDE0107  PDB ID: 9ICR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA3:DT5_P0.764-0.4570.048-2.154-6.7454.769
11T_DC2:DG6_P0.387-0.487-0.082-8.949-8.7514.963
14T_DC5:DG3_P0.49-0.3620.387-8.339-8.8313.207
16T_DG7:DC1_P-0.007-0.0380.53513.583-17.57212.361
13T_DT4:DA4_P-0.653-0.440.336.194-11.76310.202
15T_DT6:DA2_P-0.189-0.0040.07-6.781-13.565-3.07

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.