NDB ID: 2KY2    PDB ID: 2KY2 

Title:

THE STRUCTURE OF RNA INTERNAL LOOPS WITH TANDEM AG PAIRS: 5'UAGG/3'GGAU

Molecular Description:

5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3'

Structural Keywords:

B DOUBLE HELIX, OVERHANGING BASES

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

No Protein Sequence Found

Primary Citation:

Hammond, N.B., Tolbert, B.S., Kierzek, R., Turner, D.H., Kennedy, S.D.
RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA. 
Biochemistry, 49, pp. 5817 - 5827, 2010.

Experimental Information:

SOLUTION NMR

Cell Constants:

a =   b =   c = (Ångstroms)

α =   β =   γ = (degrees)

Number of Models:

Number of Models: 10 Structures

Sample Details:

1 mM RNA (5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3')-1, 80 mM sodium chloride-2, 10 mM sodium phosphate-3, 0.5 mM EDTA-4, 90% H2O/10% D2O 90% H2O/10% D2O

Download Data:

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format) 

Structure Factors (cif format)

Coordinates (pdb format, Unix compressed(.gz))

Coordinates (cif format, Unix compressed(.gz))

NMR Restraints (cif format, Unix compressed(.gz))

XML | Complete with coordinates (xml format, GNU compressed(.gz))

XML | Coordinates only (xml format, GNU compressed(.gz))

XML | Header only (xml format, GNU compressed(.gz))