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NDB ID: 2LP9    PDB ID: 2LP9 


Title:

PSEUDO-TRILOOP FROM THE SUB-GENOMIC PROMOTER OF BROME MOSAIC VIRUS

Molecular Description:

5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'

Structural Keywords:

SINGLE STRAND, HAIRPIN LOOP

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

No Protein Sequence Found

Primary Citation:

Skov, J., Gaudin, M., Podbevsek, P., Olsthoorn, R.C., Petersen, M.
The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. 
Rna, 18, pp. 992 - 1000, 2012.

Experimental Information:

SOLUTION NMR

Cell Constants:

a =   b =   c = (Ångstroms)

α =   β =   γ = (degrees)

Refinement:

The structure was refined using the program. The R value is for reflections in the resolution range to Ångstroms

Number of Models:

Number of Models: 10 Structures

Sample Details:

2 mM RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'), 10 mM sodium phosphate, 50 mM sodium chloride, 2 mM EDTA, 90% H2O/10% D2O 90% H2O/10% D2O