A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
Search for released structures

NDB ID: NA0017    PDB ID: 2VPL 


Title:

THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII

Molecular Description:

50S RIBOSOMAL PROTEIN L1

Deposited:

2008-03-01

Released:

2008-09-23

Structural Keywords:

DOUBLE HELIX, HAIRPIN LOOP, BULGE LOOP

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

Click to show/hide 1 protein sequences

Primary Citation:

Tishchenko, S., Kljashtorny, V., Kostareva, O., Nevskaya, N., Nikulin, A., Gulak, P., Piendl, W., Garber, M., Nikonov, S.
Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA. 
J. Mol. Biol., 383, pp. 301 - 305, 2008.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 21 21 2

Cell Constants:

a = 76.1   b = 144.35   c = 56.16 (Ångstroms)

α = 90.0   β = 90.0   γ = 90.0 (degrees)

Refinement:

The structure was refined using the REFMAC program. The R value is 0.212 for 26514 reflections in the resolution range 15.0 to 2.3 Ångstroms with Fobs >  0.0 sigma(Fobs) and with I >  0.0 sigma(I)