A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
Search for released structures

NDB ID: NA1877    PDB ID: 4FPV 


Title:

CRYSTAL STRUCTURE OF D. RERIO TDP2 COMPLEXED WITH SINGLE STRAND DNA PRODUCT

Molecular Description:

Tyrosyl-DNA phosphodiesterase 2 (E.C.3.1.4.-)/dna

Deposited:

2012-06-22

Released:

2012-10-31

Structural Keywords:

SINGLE STRAND

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

Click to show/hide 1 protein sequences

Primary Citation:

Shi, K., Kurahashi, K., Gao, R., Tsutakawa, S.E., Tainer, J.A., Pommier, Y., Aihara, H.
Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. 
Nat.Struct.Mol.Biol., 19, pp. 1372 - 1377, 2012.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 21 21 21

Cell Constants:

a = 58.07   b = 95.021   c = 104.506 (Ångstroms)

α = 90.0   β = 90.0   γ = 90.0 (degrees)

Refinement:

The structure was refined using the REFMAC program. The R value is 0.15869 for 56104 reflections in the resolution range 35.15 to 1.73 Ångstroms with Fobs >  0.0 sigma(Fobs) and with I >  0.0 sigma(I)