NDB ID: 5C0X PDB ID: 5C0X 
Title:
STRUCTURE OF A 12-SUBUNIT NUCLEAR EXOSOME COMPLEX BOUND TO STRUCTURED RNA
Molecular Description:
Exosome complex component RRP45
Exosome complex component SKI6
Exosome complex component RRP43
Exosome complex component RRP46
Exosome complex component RRP42
Exosome complex component MTR3
Exosome complex component RRP40
Exosome complex component RRP4
Exosome complex component CSL4
Exosome complex exonuclease DIS3
Exosome complex exonuclease RRP6/RNA Complex
Deposited:
2015-06-12
Released:
2015-08-05
Nucleic Acid Sequence:
Click to show/hide 1 nucleic acid sequences
Chain R
CCCCCGAGAGGGGGUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
Protein Sequence:
Click to show/hide 11 protein sequences
Chain K
GAMASENPDVLLSRVINVVRAASSLASQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSIDEHHESFELKEEDISDLW NNFGNIMDN
LLEMSDHSLDKLNCAINSKSRGSDLQYLGEFSGKNFSPTKRVEKPQLKFKSPIDNSESHPFIPLLKEKPNA LKPLSESLRLVDDDENNP
SHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVD LEHHDYRSYYGIVCLMQISTRERDYLV
DTLKLRENLHILNEVFTNPSIVKVFHGAFMNIIWLQRDLGLYVVGLFDTYHAS KAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPL
SKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAK RRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVR
ELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPT DVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSETKADGI
LLETISVPQIRDVMERFSVLCNSNIS KSRAKPVTNSSILLGKILPREEHDIAYSKDGLPNKVKTEDIRIRAQNFKSALANLEDIIFEIE
KPLVVPVKLEEIKTVDP ASAPNHSPEIDNLDDLVVLKKKNIQKKQPAKEKGVTEKDAVDYSKIPNILSNKPG
Chain J
GAMSVPAIAPRRKRLADGLSVTQKVFVRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLE LSAPIGKHY
VVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFV ERLPNETINDRNNRAIRK
TCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQM DSFDKDLERDTFSDFTFPEYYSTARVM
GGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIV ELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDD
NNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRR SWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAE
LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQ AETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRK
DLRDKLICSIDPPGCVDINDALHAKK LPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDR
FAFSVIWELDDSANIVN VNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETS
DPNEVEIK KLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPED
PYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMD MICRNINRK
HRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY KLTFVPTNSDKPRDVYVF
DKVEVQVRSVMDPITSKRKAELLLK
Chain A
MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVIS TEISPMAGS
QFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLM HFKKPDITVHGEQIIVHP
VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLN KNREVVQVSKAGGLPMDALTLMKCCHE
AYSIIEKITDQILQLLKEDSEKRNKYAAMLTSENAREI
Chain C
MAESTTLETIEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGNIDTKNNILGSNVL KSGKTIVIT
SITGGIIEETSASIKDLDDFGEEELFEVTKEEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSIL HSRILPKKALKVKAGVRS
ANEDGTFSVLYPDELEDDTLNETNLKMKRKWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQS VKLPRAFIDERASDLRMTIRTRGRSAT
IRETYEIICDQTKSVPLMINAKNIAFASNYGIVELDPECQLQNSDNSEEEEVD IDMDKLNTVLIADLDTEAEETSIHSTISILAAPSGN
YKQLTLMGGGAKITPEMIKRSLLLSRVRADDLSTRFNI
Chain B
GHMSRLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNI TKFSKFERS
KSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYI SGISVGLYDTTPLLDTNS
LEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK RVSNASAR
Chain E
GHMSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVDHHVENELLQV DVDIAGQRD
DALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPISLISFAIYSALNSTYLPKLI SAFDDLEVEELPTFHDYD
MVKLDINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKS FKPHLLKQGLAMVEKYAPDVVRSLENL
Chain D
GHGNNKEPNTKNRLDSAEKKKKMSVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGV ATTREKVLE
DKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAI IKDTSDIIVDPTAEQLKI
SLSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNIS PRLVV
Chain G
GPHMSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVII GTFSDSYKV
SLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIID VNLNFARQLLFNNDFPLL
KVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTV KEE
Chain F
MNVQDRRRLLGPAAAKPMAFSNTTTHVPEKKSTDLTPKGNESEQELSLHTGFIENCNGSALVEARSLGHQTSLISAVYGP RSIRGSFTS
QGTISIQLKNGLLEKYNTNELKEVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNPQDDDSQSKM TSSQISSLIPHCITSITL
ALADAGIELVDMAGAGEANGTVVSFIKNGEEIVGFWKDDGDDEDLLECLDRCKEQYNRYRDL MISCLMNQET
Chain I
GPHMACNFQFPEIAYPGKLICPQYGTENKDGEDIIFNYVPGPGTKLIQYEHNGRTLEAITATLVGTVRCEEEKKTDQEEE REGTDQSTE
EEKSVDASPNDVTRRTVKNILVSVLPGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILA VEDKPSPIDSGIGSNGSG
IVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSL GDGTNYYLTTARNDLGVVFARAANGAG
GLMYATDWQMMTSPVTGATEKRKCAKPF
Chain H
RSMSEVITITKRNGAFQNSSNLSYNNTGISDDENDEEDIYMHDVNSASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDN MTYSSVAGT
VSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQ MRSFLKEGDLLNAEVQSL
FQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQ MDLARDTPSANNSSSIKSTGPTGAVSL
NPSITRLEEESSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQR IVSAYEASMVYSNVGELIEKNVMESIGSDILTAEKM
RGNGN
Primary Citation:
Makino, D.L., Schuch, B., Stegmann, E., Baumgartner, M., Basquin, C., Conti, E.
RNA degradation paths in a 12-subunit nuclear exosome complex. 
Nature, 524, pp. 54 - 58, 2015.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 106.15 b = 177.39 c = 299.9 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the PHENIX program.
The R value is 0.2949 for 45723 reflections in
the resolution range 57.887 to 3.812 Ångstroms
with Fobs > 1.33 sigma(Fobs) and with I > 0.0 sigma(I)