NDB ID: 5TJG PDB ID: 5TJG 
NAKB(beta): 5TJG 
Title:
THERMUS AQUATICUS DELTA1.1-SIGMAA HOLOENZYME/DOWNSTREAM-FORK PROMOTER COMPLEX WITH AN OPEN CLAMP
Molecular Description:
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta'
DNA-directed RNA polymerase subunit omega
RNA polymerase sigma factor SigA/DNA Complex
Deposited:
2016-10-04
Released:
2017-06-21
Structural Keywords:
SMALL NA FRAGMENT
Nucleic Acid Sequence:
Click to show/hide 1 nucleic acid sequences
Chain G
(DT)(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DT)(DG)(DG)(DG)(DA)(DT)(DG)(DA)(DT)(DC)(DG)(DC) (DG)(DA)(
DG)(DG)(DG)(DA)(DC)(DA)(DC)(DG)(DG)
Protein Sequence:
Click to show/hide 5 protein sequences
Chain A,B
MLESKLKAPVFTARTQGRHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL NLKELVVRF
LDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKD RINAIPVDAIFSPVRRVA
FQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSK GEKRESAEEDLDLPLEELGLSTRVLHS
LKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTLKE
Chain D
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEV TRSIVRRYR
MGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEYRE LRYGKQETYPLPAGVDAL
VKDGEEVVKGQELAPGVVSRMDGVALYRFPRRVRVDYLRKERAALRIPLSAWVEKEAYRPGE VLAELSEPYLFRAEESGVVELKDLAEG
HLIYLRQEEEVVARYFLPAGMTPLVVEGEIVEVGQPLAEGKGLLRLPRHMTAK EVEAEEEGDSVHLTLFLEWTEPKDYKVAPHMNVIVP
EGAKVQAGEKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARV YPFEDDVEVTTGDRVAPGDVLADGGKVKSEIYGRVEVDLVRNVVR
VVESYDIDARMGAEAIQELLKELDLEKLERELLEE MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGR
FATSDLNDLYRRLINRNNRLKKLLAQ GAPEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRV
DYSGRSVIVVGPQLKLH QCGLPKRMALELFKPFLLKKMEEKAIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLG
IQAFQPVL VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKK
GAGMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDVVTVRYLGRRLETSPGRI LFARIVGEA
VGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEEK QRYLEEADRKLRQIEQAY
EMGFLTDRERYDQVIQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCG MRGLMQKPSGETFEVPVRSSFREGLTV
LEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISV PLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEAL
GRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGV CQKCYGYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRTFHTGG
VAVGTDITQGLPRVIELFEARRPKAKAVISEIDGV VRIEEGEDRLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPLTRGAIDPHQ
LLEAKGPEAVERYLVDEIQKVYRAQG VKLHDKHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMG
VTKSALSTKSWLSAASF QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKEAVEAKEKEAPR
RPVRREQP GKGL
Chain C
MEIKRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQ DECREKDLT
YQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA SIIPLPKRGPWIDLEVEA
SGVVTMKVNKRKFPLVLLLRVLGYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLFT LLRPGDPPKKDKALAYLFGLLADPKRY
DLGEAGRYKAEEKLGVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGH EVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVR
ERMVMGSPDTLTPAKLVNSRPLEAALREFFSRSQLSQFKDETNP LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPE
GANIGLITSLAAYARVDALGFIRTPYRRVKNGVVT EEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEPVIVAPEEVEFMDV
SPKQVFSLNTNLIPFLEHDDANRALM GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVVKVDGTRIAVRYEDGRLVEH
PLRRYARSNQGTAFDQR PRVRVGQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEA
RDTKLGPE RITRDIPHLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV
VGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM NLGQILETH
LGLAGYFLGQRYISPVFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPE EQLKELFDLGKVVLYDGR
TGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL EAYGAAHTLQEMLTIKSDDIEGRNAAY
QAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR
Chain F
TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV EEVDGKLKS
LPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS TYATWWIRQAINRAIADQ
ARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS LETPIGDEKDSFYGDFIPDENLPSPVE
AAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRER IRQIENKALRKLKYHESRTRKLRDFLE
Chain E
MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHRFKNTVLEPEERPKMRTLEGLYDDPNAVTWAMKELLTGRLFFGENLV PEDRLQKEM
ERLYPTEEEA
Primary Citation:
Feklistov, A., Bae, B., Hauver, J., Lass-Napiorkowska, A., Kalesse, M., Glaus, F., Altmann, K.H., Heyduk, T., Landick, R., Darst, S.A.
RNA polymerase motions during promoter melting. 
Science, 356, pp. 863 - 866, 2017.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 1
Cell Constants:
a = 104.098 b = 111.423 c = 143.177 (Ångstroms)
α = 104.12 β = 99.66 γ = 109.43 (degrees)
Refinement:
The structure was refined using the PHENIX program.
The R value is 0.226 for 169540 reflections in
the resolution range 38.627 to 2.6 Ångstroms
with Fobs > 1.96 sigma(Fobs) and with I > 0.0 sigma(I)