NDB ID: 5UHC PDB ID: 5UHC 
NAKB(beta): 5UHC 
Title:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS TRANSCRIPTION INITIATION COMPLEX CONTAINING 3NT RNA IN COMPLEX WITH RIFAMPIN
Molecular Description:
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta'
DNA-directed RNA polymerase subunit omega
RNA polymerase sigma factor SigA/DNA Complex
Deposited:
2017-01-11
Released:
2017-04-12
Structural Keywords:
B DOUBLE HELIX, OPEN HELIX
Nucleic Acid Sequence:
Click to show/hide 3 nucleic acid sequences
Chain G
(DC)(DA)(DT)(DC)(DC)(DG)(DT)(DG)(DA)(DG)(DT)(DC)(DC)(DA)(DG)(DG)
Chain H
(DT)(DA)(DT)(DA)(DA)(DT)(DG)(DG)(DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DA)(DC)(DG)(DG) (DA)(DT)(
DG)
Chain I
GGA
Protein Sequence:
Click to show/hide 5 protein sequences
Chain A,B
MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTEIILNL KSLVVSSEE
DEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIG RIPVDSIYSPVLKVTYKV
DATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE ADHIASFALPIDDLDLTVRSYNCLKRE
GVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSFDPSEV AGYDVATGTWSTEGAYDEQDYAETEQL
Chain D
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGV EVTRAKVRR
ERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERK AVEDQRDGELEARAQKLE
ADLAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL YRELVDRYGEYFTGAMGAESIQKLIEN
FDIDAEAESLRDVIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVI PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR
LIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLK SLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPK
LMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNA
DFDGDQMAVHLPLSAEAQAEARILML SSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQPASGDHPETGVYSSPAEAIMAAD
RGVLSVRAKIKVRLTQL RPPVEIEAELFGHSGWQPGDAWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQT
VDKLKDAG FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKEATDEVGQALREHYPDDNPII
TIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDV SQDVIVREH
DCQTERGIVVELAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV KVRSVLTCATSTGVCATC
YGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVP RGKAPIADVTGRVRLEDGERFYKITIV
PDDGGEEVVYDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHE VLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEV
IVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL
NGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARA AAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR
Chain C
MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDV NPVGGLEEV
LYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMM TEKGTFIINGTERVVVSQ
LVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA LGWTSEQIVERFGFSEIMRSTLEKDNT
VGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL GLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMT
VPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVV RERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNP
LSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTAD
EEDRHVVAQANSPIDADGRFVEPRVL VRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEA
PLVGTGMELRAAIDAGD VVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGE
MALGKNLL VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKIS DGDKLAGRH
GNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP DELLEAQPNAIVSTPVFD
GAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDK IHARSTGPYSMITQQPLGGKAQFGGQR
FGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPES FKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE
RAAANLGINLSRNESASVEDLA
Chain F
MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKPASAPQDTTTSTIPKRKTRAA AKSAAAKAP
SARGHATKPRAPKDAQHEAATDPEDALDSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDL DSGDDEDHEDLEAEAAVA
PGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL LNAEEEVELAKRIEAGLYATQLMTELS
ERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDL IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT
RAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV
VAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Chain E
MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG PLVEPGLQE
KPLSIALREIHADLLEHTEGE
Primary Citation:
Lin, W., Mandal, S., Degen, D., Liu, Y., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.
Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. 
Mol. Cell, 66, pp. 169 - 179.e8, 2017.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 150.05 b = 167.39 c = 195.228 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the PHENIX program.
The R value is 0.2072 for 43856 reflections in
the resolution range 48.807 to 3.796 Ångstroms
with Fobs > 1.49 sigma(Fobs) and with I > 0.0 sigma(I)