A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Sep-2020 number of released structures: 10951
Search for released structures

NDB ID: 6IFM    PDB ID: 6IFM 


Title:

CRYSTAL STRUCTURE OF DNA BOUND VAPBC FROM SALMONELLA TYPHIMURIUM

Molecular Description:

tRNA(fMet)-specific endonuclease VapC
Antitoxin VapB/DNA Complex

Deposited:

2018-09-20

Released:

2020-01-29

Structural Keywords:

B DOUBLE HELIX

Nucleic Acid Sequence:

Click to show/hide 2 nucleic acid sequences

Protein Sequence:

Click to show/hide 2 protein sequences

Primary Citation:

Park, D., Yoon, H.J., Lee, K.Y., Park, S.J., Cheon, S.H., Lee, H.H., Lee, S.J., Lee, B.J.
Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. 
Faseb J., 34, pp. 3051 - 3068, 2020.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 31

Cell Constants:

a = 93.677   b = 93.677   c = 122.44 (Ångstroms)

α = 90.0   β = 90.0   γ = 120.0 (degrees)

Refinement:

The structure was refined using the PHENIX program. The R value is 0.2105 for 29329 reflections in the resolution range 48.867 to 2.804 Ångstroms with Fobs >  24.59 sigma(Fobs) and with I >  0.0 sigma(I)