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NDB ID: 6KIJ    PDB ID: 6KIJ 


Title:

CRYSTAL STRUCTURE OF YEDK WITH SSDNA CONTAINING AN ABASIC SITE

Molecular Description:

Tubulinyl-Tyr carboxypeptidase 1 (E.C.3.4.17.17)
Small vasohibin-binding protein

Deposited:

2019-07-18

Released:

2019-08-07

Structural Keywords:

SMALL NA FRAGMENT

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

Click to show/hide 1 protein sequences

Primary Citation:

Wang, N., Bao, H., Chen, L., Liu, Y., Li, Y., Wu, B., Huang, H.
Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. 
Nucleic Acids Res., 47, pp. 10388 - 10399, 2019.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 1 21 1

Cell Constants:

a = 47.444   b = 44.08   c = 55.148 (Ångstroms)

α = 90.0   β = 102.33   γ = 90.0 (degrees)

Refinement:

The structure was refined using the PHENIX program. The R value is 0.154 for 29992 reflections in the resolution range 23.17 to 1.58 Ångstroms with Fobs >  1.35 sigma(Fobs) and with I >  0.0 sigma(I)