As of 15-Mar-2023 number of released structures: 12686
Structural Features
Base Pair Hydrogen Bonding Classification
Nucleic Acid Backbone Torsions
Base Pair Morphology Parameters
Biological Assembly 1
RNA View
NDB ID: 6KVD PDB ID: 6KVD 
NAKB(beta): 6KVD
Title:
CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H2A.J
Molecular Description:
Histone H3.1
Histone H4
Histone H2A.J
Histone H2B type 1-J/DNA Complex
Deposited:
2019-09-04Released:
2019-12-18Structural Keywords:
B DOUBLE HELIX
Nucleic Acid Sequence:
Click to show/hide 1 nucleic acid sequences
Protein Sequence:
Click to show/hide 4 protein sequences
Primary Citation:
Tanaka, H., Sato, S., Koyama, M., Kujirai, T., Kurumizaka, H.
Biochemical and structural analyses of the nucleosome containing human histone H2A.J.
J.Biochem., 167, pp. 419 - 427, 2020.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 99.64 b = 108.791 c = 171.177 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the PHENIX program. The R value is 0.215 for 93680 reflections in the resolution range 47.835 to 2.21 Ångstroms with Fobs > 1.34 sigma(Fobs) and with I > 0.0 sigma(I)
Download Data:
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format) 1
Structure Factors (cif format)
Coordinates (pdb format, Unix compressed(.gz))
Coordinates (cif format, Unix compressed(.gz))
NMR Restraints (cif format, Unix compressed(.gz))
XML | Complete with coordinates (xml format, GNU compressed(.gz))