## NDB ID: 6L9Z PDB ID: 6L9Z

### Title:

338 BP DI-NUCLEOSOME ASSEMBLED WITH LINKER HISTONE H1.X

### Molecular Description:

Histone H3.1

Histone H4

Histone H2AX

Histone H2B type 1-J/DNA Complex

### Deposited:

2019-11-11

### Released:

2021-02-17

### Structural Keywords:

B DOUBLE HELIX

### Nucleic Acid Sequence:

Click to show/hide 2 nucleic acid sequences

Chain I

(DA)(DT)(DC)(DG)(DC)(DG)(DG)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DT) (DC)(DC)(

DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA) (DA)(DT)(DT)(DG)(D

G)(DT)(DC)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA) (DG)(DC)(DA)(DC)(DC)(DG)(DC

)(DT)(DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA) (DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)

(DT)(DA)(DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT) (DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DC)(DT)(DA)(

DG)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT) (DA)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(D

C)(DA)(DC)(DG)(DT)(DG)(DT) (DG)(DA)(DG)(DA)(DC)(DC)(DG)(DG)(DC)(DA)(DC)(DA)(DT)(DG)(DA)(DA

)(DA)(DA)(DA)(DA) (DA)(DA)(DA)(DA)(DG)(DC)(DA)(DG)(DG)(DA)(DG)(DC)(DG)(DC)(DA)(DA)(DA)(DA)

(DA)(DA) (DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)

(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG) (DA)(DC)(

DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(D

A)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA) (DC)(DC)(DG)(DC)(DG)(DT)(DT

)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DC)(DT)(DA) (DG)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)

(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA) (DG)(DG)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DG)(DA)(

DG)(DA)(DC)(DC)(DG)(DG)(DC)(DA)(DC) (DA)(DT)(DG)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DC)(D

G)(DC)(DG)(DA)(DT)

Chain J

(DA)(DT)(DC)(DG)(DC)(DG)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DT) (DG)(DC)(

DC)(DG)(DG)(DT)(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG) (DG)(DA)(DG)(DA)(D

C)(DT)(DA)(DG)(DT)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)(DC)(DT)(DA) (DG)(DT)(DG)(DG)(DC)(DG)(DG

)(DT)(DT)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DG)(DG)(DT)(DA) (DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)

(DT)(DA)(DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT) (DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)(

DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT) (DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA)(DG)(D

C)(DG)(DG)(DC)(DC)(DT)(DC) (DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DT

)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DG)(DC)(DG)(DC)(DT)(DC)(DC)(DT)(DG)(DC)(DT)(DT)(DT)(DT)

(DT)(DT) (DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DT)(DG)(DC)(DC)(DG)(DG)(DT)(DC)(DT)(DC)(DA)(DC)

(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DA)(DA) (DG)(DC)(

DG)(DC)(DT)(DT)(DC)(DT)(DA)(DG)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA) (DA)(DA)(DC)(DG)(D

C)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA) (DC)(DG)(DT)(DG)(DC)(DG)(DT

)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA) (DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)

(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG) (DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(

DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DG)(DC)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(D

G)(DC)(DG)(DA)(DT)

### Protein Sequence:

Click to show/hide 5 protein sequences

Chain A,E,K,O

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSSA

VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Chain C,G,M,Q

MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII PRHLQLAIR

NDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK

Chain B,F,L,P

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK TVTAMDVVY

ALKRQGRTLYGFGG

Chain D,H,N,R

MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR LAHYNKRST

ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Chain S

MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWF DQQNGRTYL

KYSIKALVQNDTLLQVKGTGANGSFKLNRKKLEGGGERRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKK PARGQKPEQRSHKKGAGA

KKDKGGKAKKTAAAGGKKVKKAAKPSVPKVPKGRK

### Primary Citation:

Sharma, D., Davey, C.A., Adhireksan, Z.

Dinucleosome 338 bp with linker histone H1.X

*To Be Published*, , pp. - , 0.

### Experimental Information:

X-RAY DIFFRACTION

### Space Group:

P 1 21 1

### Cell Constants:

a = 103.5 b = 101.41 c = 215.67 (Ångstroms)

α = 90.0 β = 97.48 γ = 90.0 (degrees)

### Refinement:

The structure was refined using the REFMAC program.
The R value is 0.2048 for 147213 reflections in
the resolution range 213.83 to 2.5 Ångstroms
with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)