NDB ID: 6L9Z PDB ID: 6L9Z 
Title:
338 BP DI-NUCLEOSOME ASSEMBLED WITH LINKER HISTONE H1.X
Molecular Description:
Histone H3.1
Histone H4
Histone H2AX
Histone H2B type 1-J/DNA Complex
Deposited:
2019-11-11
Released:
2021-02-17
Structural Keywords:
B DOUBLE HELIX
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Chain I
(DA)(DT)(DC)(DG)(DC)(DG)(DG)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DT) (DC)(DC)(
DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA) (DA)(DT)(DT)(DG)(D
G)(DT)(DC)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA) (DG)(DC)(DA)(DC)(DC)(DG)(DC
)(DT)(DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA) (DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)
(DT)(DA)(DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT) (DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DC)(DT)(DA)(
DG)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT) (DA)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(D
C)(DA)(DC)(DG)(DT)(DG)(DT) (DG)(DA)(DG)(DA)(DC)(DC)(DG)(DG)(DC)(DA)(DC)(DA)(DT)(DG)(DA)(DA
)(DA)(DA)(DA)(DA) (DA)(DA)(DA)(DA)(DG)(DC)(DA)(DG)(DG)(DA)(DG)(DC)(DG)(DC)(DA)(DA)(DA)(DA)
(DA)(DA) (DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)
(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG) (DA)(DC)(
DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(D
A)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA) (DC)(DC)(DG)(DC)(DG)(DT)(DT
)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DC)(DT)(DA) (DG)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)
(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA) (DG)(DG)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DG)(DA)(
DG)(DA)(DC)(DC)(DG)(DG)(DC)(DA)(DC) (DA)(DT)(DG)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DC)(D
G)(DC)(DG)(DA)(DT)
Chain J
(DA)(DT)(DC)(DG)(DC)(DG)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DT) (DG)(DC)(
DC)(DG)(DG)(DT)(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG) (DG)(DA)(DG)(DA)(D
C)(DT)(DA)(DG)(DT)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)(DC)(DT)(DA) (DG)(DT)(DG)(DG)(DC)(DG)(DG
)(DT)(DT)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DG)(DG)(DT)(DA) (DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)
(DT)(DA)(DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT) (DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)(
DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT) (DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA)(DG)(D
C)(DG)(DG)(DC)(DC)(DT)(DC) (DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DT
)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DG)(DC)(DG)(DC)(DT)(DC)(DC)(DT)(DG)(DC)(DT)(DT)(DT)(DT)
(DT)(DT) (DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DT)(DG)(DC)(DC)(DG)(DG)(DT)(DC)(DT)(DC)(DA)(DC)
(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DA)(DA) (DG)(DC)(
DG)(DC)(DT)(DT)(DC)(DT)(DA)(DG)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA) (DA)(DA)(DC)(DG)(D
C)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA) (DC)(DG)(DT)(DG)(DC)(DG)(DT
)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA) (DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)
(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG) (DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(
DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DG)(DC)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(D
G)(DC)(DG)(DA)(DT)
Protein Sequence:
Click to show/hide 5 protein sequences
Chain A,E,K,O
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSSA
VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Chain C,G,M,Q
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII PRHLQLAIR
NDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Chain B,F,L,P
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK TVTAMDVVY
ALKRQGRTLYGFGG
Chain D,H,N,R
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR LAHYNKRST
ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Chain S
MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWF DQQNGRTYL
KYSIKALVQNDTLLQVKGTGANGSFKLNRKKLEGGGERRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKK PARGQKPEQRSHKKGAGA
KKDKGGKAKKTAAAGGKKVKKAAKPSVPKVPKGRK
Primary Citation:
Sharma, D., Davey, C.A., Adhireksan, Z.
Dinucleosome 338 bp with linker histone H1.X
To Be Published, , pp. - , 0.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 1 21 1
Cell Constants:
a = 103.5 b = 101.41 c = 215.67 (Ångstroms)
α = 90.0 β = 97.48 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program.
The R value is 0.2048 for 147213 reflections in
the resolution range 213.83 to 2.5 Ångstroms
with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)
