NDB ID: 6LA9 PDB ID: 6LA9 
NAKB(beta): 6LA9
Title:
349 BP DI-NUCLEOSOME HARBORING COHESIVE DNA TERMINI ASSEMBLED WITH LINKER HISTONE H1.0 (HIGH CRYOPROTECTANT)
Molecular Description:
Histone H3.1
Histone H4
Histone H2AX
Histone H2B type 1-J/DNA Complex
Deposited:
2019-11-12
Released:
2020-10-07
Structural Keywords:
B DOUBLE HELIX
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Chain I
(DC)(DG)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA) (DT)(DC)(
DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC) (DA)(DA)(DT)(DT)(D
G)(DG)(DT)(DC)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT) (DA)(DG)(DC)(DA)(DC)(DC)(DG
)(DC)(DT)(DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT) (DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)
(DC)(DT)(DA)(DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT) (DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DC)(DT)(
DA)(DG)(DA)(DA)(DG)(DC)(DG)(DC)(DT) (DT)(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(D
G)(DC)(DA)(DC)(DG)(DT)(DG) (DT)(DG)(DA)(DG)(DA)(DC)(DC)(DG)(DG)(DC)(DA)(DC)(DA)(DT)(DG)(DA
)(DA)(DA)(DA)(DA) (DA)(DA)(DA)(DA)(DA)(DG)(DC)(DA)(DT)(DG)(DC)(DT)(DC)(DG)(DA)(DG)(DT)(DA)
(DT)(DG) (DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DC)(DC)(DG)(DG)
(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG) (DT)(DC)(
DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC) (DG)(DC)(DT)(DT)(D
A)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC) (DT)(DG)(DT)(DC)(DT)(DA)(DC
)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG) (DC)(DC)(DA)(DC)(DT)(DA)(DG)(DA)(DA)
(DG)(DC)(DG)(DC)(DT)(DT)(DA)(DC)(DT)(DA)(DG) (DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(DC)(DA)(DC)(
DG)(DT)(DG)(DT)(DG)(DA)(DG)(DA)(DC) (DC)(DG)(DG)(DC)(DA)(DC)(DA)(DT)(DG)(DA)(DA)(DA)(DA)(D
A)(DA)(DA)(DA)(DA)(DA)(DC) (DC)(DA)(DG)(DC)(DG)(DG)(DT)(DA)(DC)
Chain J
(DC)(DG)(DC)(DT)(DG)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG) (DT)(DG)(
DC)(DC)(DG)(DG)(DT)(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT) (DG)(DG)(DA)(DG)(D
A)(DC)(DT)(DA)(DG)(DT)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)(DC)(DT) (DA)(DG)(DT)(DG)(DG)(DC)(DG
)(DG)(DT)(DT)(DA)(DA)(DA)(DA)(DC)(DG)(DC)(DG)(DG)(DT) (DA)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)
(DG)(DT)(DA)(DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT) (DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(
DA)(DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC) (DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA)(D
G)(DC)(DG)(DG)(DC)(DC)(DT) (DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DG)(DC)(DG)(DT
)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DC)(DA)(DT)(DA)(DC)(DT)(DC)(DG)(DA)(DG)(DC)(DA)(DT)
(DG)(DC) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DT)(DG)(DC)(DC)(DG)(DG)
(DT)(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC) (DT)(DA)(
DG)(DT)(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)(DC)(DT)(DA)(DG)(DT)(DG)(DG)(DC) (DG)(DG)(DT)(DT)(D
A)(DA)(DA)(DA)(DC)(DG)(DC)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG) (DC)(DG)(DC)(DG)(DT)(DA)(DC
)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG) (DG)(DT)(DG)(DC)(DT)(DA)(DG)(DA)(DG)
(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC) (DC)(DA)(DA)(DT)(DT)(DG)(DA)(DG)(DC)(DG)(DG)(
DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DC) (DC)(DG)(DG)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(D
T)(DT)(DT)(DT)(DT)(DT)(DC) (DC)(DA)(DG)(DC)(DG)(DG)(DT)(DA)(DC)
Protein Sequence:
Click to show/hide 5 protein sequences
Chain A,E,K,O
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSSA
VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Chain C,G,M,Q
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII PRHLQLAIR
NDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Chain B,F,L,P
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK TVTAMDVVY
ALKRQGRTLYGFGG
Chain D,H,N,R
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR LAHYNKRST
ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Chain S,T
MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGV LKQTKGVGA
SGSFRLAKSDEPKKSVAFKKTKKEIKKVATPKKASKPKKAASKAPTKKPKATPVKKAKKKLAATPKKAKKP KTVKAKPVKASKPKKAKP
VKPKAKSSAKRAGKKK
Primary Citation:
Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.
Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun, 11, pp. 4747 - 4747, 2020.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 120.78 b = 172.88 c = 216.041 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program.
The R value is 0.1958 for 46780 reflections in
the resolution range 91.78 to 3.7 Ångstroms
with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)
