NDB ID: 6WDZ    PDB ID: 6WDZ     NAKB(beta): 6WDZ 

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Title:

PORCINE CIRCOVIRUS 2 REP DOMAIN COMPLEXED WITH A SINGLE-STRANDED DNA 10-MER COMPRISING THE CLEAVAGE SITE

Molecular Description:

Replication-associated protein (E.C.3.1.21.-)

Deposited:

2020-04-01

Released:

2020-12-16

Structural Keywords:

SMALL NA FRAGMENT, HAIRPIN LOOP

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

Click to show/hide 1 protein sequences

Primary Citation:

Tompkins, K.J., Houtti, M., Litzau, L.A., Aird, E.J., Everett, B.A., Nelson, A.T., Pornschloegl, L., Limon-Swanson, L.K., Evans, R.L., Evans, K., Shi, K., Aihara, H., Gordon, W.R.
Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering. 
Nucleic Acids Res., 49, pp. 1046 - 1064, 2021.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 64

Cell Constants:

a = 99.527   b = 99.527   c = 73.695 (Ångstroms)

α = 90.0   β = 90.0   γ = 120.0 (degrees)

Refinement:

The structure was refined using the PHENIX program. The R value is 0.2317 for 26261 reflections in the resolution range 43.1 to 2.03 Ångstroms with Fobs >  1.35 sigma(Fobs) and with I >  0.0 sigma(I)

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Biological Assembly coordinates (pdb format) 1 2 3 4 

Structure Factors (cif format)

Coordinates (pdb format, Unix compressed(.gz))

Coordinates (cif format, Unix compressed(.gz))

NMR Restraints (cif format, Unix compressed(.gz))

XML | Complete with coordinates (xml format, GNU compressed(.gz))

XML | Coordinates only (xml format, GNU compressed(.gz))

XML | Header only (xml format, GNU compressed(.gz))