NDB ID: 7B4Z    PDB ID: 7B4Z 

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Title:

SYNTHETIC DNA DUPLEX DODECAMER

Molecular Description:

DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3')
DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*TP*G)-3')

Deposited:

2020-12-03

Released:

2020-12-16

Structural Keywords:

B DOUBLE HELIX

Nucleic Acid Sequence:

Click to show/hide 2 nucleic acid sequences

Protein Sequence:

No Protein Sequence Found

Primary Citation:

Lomzov, A.A., Sviridov, E.A., Shernuykov, A.V., Shevelev, G.Y., Pyshnyi, D.V., Bagryanskaya, E.G.
Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels.
J Phys Chem B, 120, pp. 5125 - 5133, 2016.

Experimental Information:

SOLUTION NMR

Number of Models:

Number of Models: 10 Structures

Sample Details:

1.1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.1 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*TP*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 200 mM EDTA, 100% D2O 100% D2O

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Biological Assembly coordinates (pdb format) 

Structure Factors (cif format)

Coordinates (pdb format, Unix compressed(.gz))

Coordinates (cif format, Unix compressed(.gz))

NMR Restraints (cif format, Unix compressed(.gz))

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