As of 24-May-2023 number of released structures: 12803
Structural Features
RNA Base-Pairs, Stacking, etc.
Interactive basepair map with 3D fragment visualization for: 8DH5 
Base Pair Hydrogen Bonding Classification
Nucleic Acid Backbone Torsions
Base Pair Morphology Parameters
Biological Assembly 1
RNA View
NDB ID: 8DH5 PDB ID: 8DH5 NAKB: 8DH5
Title:
T7 RNA POLYMERASE ELONGATION COMPLEX WITH UNNATURAL BASE DPA-ATP MISMATCH
Molecular Description:
Deposited:
2022-06-24Released:
2023-02-01Nucleic Acid Sequence:
Click to show/hide 3 nucleic acid sequences
Protein Sequence:
Click to show/hide 1 protein sequences
Primary Citation:
Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun, 14, pp. 195 - 195, 2023.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 1
Cell Constants:
a = 78.544 b = 86.305 c = 201.199 (Ångstroms)
α = 89.79 β = 85.39 γ = 69.49 (degrees)
Refinement:
The structure was refined using the PHENIX program. The R value is 0.2341 for 113362 reflections in the resolution range 47.43 to 2.85 Ångstroms with Fobs > 1.96 sigma(Fobs) and with I > 0.0 sigma(I)
Download Data:
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format) 1 2 3 4
Structure Factors (cif format)
Coordinates (pdb format, Unix compressed(.gz))
Coordinates (cif format, Unix compressed(.gz))
NMR Restraints (cif format, Unix compressed(.gz))
XML | Complete with coordinates (xml format, GNU compressed(.gz))