NDB ID: 8E5D    PDB ID: 8E5D     NAKB: 8E5D 

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Title:

CRYSTAL STRUCTURE OF DOUBLE-STRANDED DNA DEAMINASE TOXIN DDDA IN COMPLEX WITH DNA WITH THE TARGET CYTOSINE PARKED IN THE MAJOR GROOVE

Molecular Description:

Deposited:

2022-08-21

Released:

2023-05-24

Nucleic Acid Sequence:

Click to show/hide 2 nucleic acid sequences

Protein Sequence:

Click to show/hide 1 protein sequences

Primary Citation:

Yin, L.L., Shi, K., Aihara, H.
Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA
To Be Published, , pp. - , 0.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 2 2 21

Cell Constants:

a = 31.699   b = 94.611   c = 138.465 (Ångstroms)

α = 90.0   β = 90.0   γ = 90.0 (degrees)

Refinement:

The structure was refined using the PHENIX program. The R value is 0.1997 for 13172 reflections in the resolution range 44.77 to 2.39 Ångstroms with Fobs >  1.34 sigma(Fobs) and with I >  0.0 sigma(I)

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Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

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Biological Assembly coordinates (pdb format) 1

Structure Factors (cif format)

Coordinates (pdb format, Unix compressed(.gz))

Coordinates (cif format, Unix compressed(.gz))

NMR Restraints (cif format, Unix compressed(.gz))

XML | Complete with coordinates (xml format, GNU compressed(.gz))

XML | Coordinates only (xml format, GNU compressed(.gz))

XML | Header only (xml format, GNU compressed(.gz))