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NDB ID: BD0097    PDB ID: 2DPC 


Title:

CRYSTAL STRUCTURE OF D(CGCGAATXCGCG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE

Molecular Description:

5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'
(6-AMINOHEXYL)CARBAMIC ACID

Deposited:

2006-05-08

Released:

2007-04-17

Structural Keywords:

B DOUBLE HELIX

Nucleic Acid Sequence:

Click to show/hide 1 nucleic acid sequences

Protein Sequence:

No Protein Sequence Found

Primary Citation:

Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules 
Nucleic Acids Res., 35, pp. 1969 - 1977, 2007.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 21 21 21

Cell Constants:

a = 25.214   b = 40.533   c = 63.887 (Ångstroms)

α = 90.0   β = 90.0   γ = 90.0 (degrees)

Refinement:

The structure was refined using the CNS program. The R value is 0.0 for 9606 reflections in the resolution range 10.0 to 1.55 Ångstroms with Fobs >  3.0 sigma(Fobs) and with I >  0.0 sigma(I)