NDB ID: DR0036    PDB ID: 2OE8     NAKB(beta): DR0036 

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Title:

1.8 A X-RAY CRYSTAL STRUCTURE OF APRAMYCIN COMPLEX WITH RNA FRAGMENT GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 5'-OVERHANG

Molecular Description:

Synthetic RNA fragment containing the human ribosomal decoding A site
apramycin

Deposited:

2006-12-28

Released:

2007-02-13

Structural Keywords:

A DOUBLE HELIX, OVERHANGING BASES, MISMATCHED BASE PAIR, BULGE

Nucleic Acid Sequence:

Click to show/hide 2 nucleic acid sequences

Protein Sequence:

No Protein Sequence Found

Primary Citation:

Hermann, T., Tereshko, V., Skripkin, E., Patel, D.J.
Apramycin recognition by the human ribosomal decoding site. 
Blood Cells Mol.Dis., 38, pp. 193 - 198, 2007.

Experimental Information:

X-RAY DIFFRACTION

Space Group:

P 21 21 21

Cell Constants:

a = 27.858   b = 37.259   c = 85.586 (Ångstroms)

α = 90.0   β = 90.0   γ = 90.0 (degrees)

Refinement:

The structure was refined using the REFMAC program. The R value is 0.20984 for 8264 reflections in the resolution range 20.0 to 1.8 Ångstroms with Fobs >  0.0 sigma(Fobs) and with I >  0.0 sigma(I)

Download Data:

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format) 1

Structure Factors (cif format)

Coordinates (pdb format, Unix compressed(.gz))

Coordinates (cif format, Unix compressed(.gz))

NMR Restraints (cif format, Unix compressed(.gz))

XML | Complete with coordinates (xml format, GNU compressed(.gz))

XML | Coordinates only (xml format, GNU compressed(.gz))

XML | Header only (xml format, GNU compressed(.gz))