As of 31-May-2023 number of released structures: 12820
Structural Features
Base Pair Hydrogen Bonding Classification
Nucleic Acid Backbone Torsions
Base Pair Morphology Parameters
Biological Assembly 1
RNA View
NDB ID: NA0471 PDB ID: 3LZI 
NAKB: NA0471
Title:
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
Molecular Description:
Deposited:
2010-03-01Released:
2010-05-12Structural Keywords:
B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Protein Sequence:
Click to show/hide 1 protein sequences
Primary Citation:
Beckman, J., Wang, M., Blaha, G., Wang, J., Konigsberg, W.H.
Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, pp. 4116 - 4125, 2010.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 78.148 b = 117.603 c = 130.681 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program. The R value is 0.20817 for 49070 reflections in the resolution range 38.15 to 2.3 Ångstroms with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)
Download Data:
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format) 1
Structure Factors (cif format)
Coordinates (pdb format, Unix compressed(.gz))
Coordinates (cif format, Unix compressed(.gz))
NMR Restraints (cif format, Unix compressed(.gz))
XML | Complete with coordinates (xml format, GNU compressed(.gz))