NDB ID: NA1390 PDB ID: 4A09 
Title:
STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 15 BP CPD-DUPLEX (PURINE AT D-1 POSITION) AT 3.1 A RESOLUTION (CPD 2)
Molecular Description:
DNA DAMAGE-BINDING PROTEIN 1
DNA DAMAGE-BINDING PROTEIN 2
Deposited:
2011-09-08
Released:
2011-11-30
Structural Keywords:
B DOUBLE HELIX, INTERNAL LOOP, FLIPPED-OUT BASES
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Chain G
(DG)(DG)(DT)(DG)(DA)(DA)(DA)(TTD)(DA)(DG)(DC)(DA)(DG)(DG)
Chain H
(DC)(DC)(DT)(DG)(DC)(DT)(DC)(DC)(DT)(DT)(DT)(DC)(DA)(DC)(DC)(DC)
Protein Sequence:
Click to show/hide 2 protein sequences
Chain A
MHHHHHHVDENLYFQGGGRMSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI AVMELFRPK
GESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFK VIPLDRDNKELKAFNIRL
EELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYAVSLREKEFNKGPWKQENVEAEASMVIA VPEPFGGAIIIGQESITYHNGDKYLAI
APPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLN
VDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGA FKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLV
LSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCG NVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA
LYYLQIHPQELRQISHTEMEHEVACL DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLC
ALGDGALFYFGLNIETG LLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLAL
ANNSTLTI GTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS
FGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV AEKEVKGAV
YSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN FEEIARDFNPNWMSAVEI
LDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETS TPTQGSVLFGTVNGMIGLVTSLSESWY
NLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDIS RPKMQEVVANLQYDDGSGMKREATADDLIKVVEELT
RIH
Chain B
MHHHHHHRRLVPRGSGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEW HPTHPTTVA
VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS WDYWYCCVDVSVSRQMLA
TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN SYIAEMPHEKPVNAAYFNPTDSTKLLT
TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL
NKFSPTGDVLASGMGFNILIWNREDT
Primary Citation:
Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation 
Cell(Cambridge,Mass.), 147, pp. 1024 - , 2011.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 111.65 b = 122.94 c = 154.2 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program.
The R value is 0.24833 for 37137 reflections in
the resolution range 48.27 to 3.1 Ångstroms
with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)