NDB ID: NA1392 PDB ID: 4A0B 
Title:
STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP CPD-DUPLEX (PYRIMIDINE AT D-1 POSITION) AT 3.8 A RESOLUTION (CPD 4)
Molecular Description:
DNA DAMAGE-BINDING PROTEIN 1
DNA DAMAGE-BINDING PROTEIN 2
Deposited:
2011-09-08
Released:
2011-11-30
Structural Keywords:
B DOUBLE HELIX, INTERNAL LOOP, OVERHANGING BASES, FLIPPED-OUT BASES
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Chain G,I
(DG)(DG)(DG)(DT)(DG)(DA)(DA)(DT)(TTD)(DA)(DG)(DC)(DA)(DG)(DG)
Chain H,J
(DC)(DC)(DT)(DG)(DC)(DT)(DC)(DC)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DC)
Protein Sequence:
Click to show/hide 2 protein sequences
Chain A,C
MHHHHHHVDENLYFQGGGRMSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI AVMELFRPK
GESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFK VIPLDRDNKELKAFNIRL
EELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIA VPSPFGGAIIIGQESITYHNGDKYLAI
APPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLN
VDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGA FKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLV
LSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCG NVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA
LYYLQIHPQELRQISHTEMEHEVACL DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLC
ALGDGALFYFGLNIETG LLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLAL
ANNSTLTI GTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS
FGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV AEKEVKGAV
YSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN FEEIARDFNPNWMSAVEI
LDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETS TPTQGSVLFGTVNGMIGLVTSLSESWY
NLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDIS RPKMQEVVANLQYDDGSGMKREATADDLIKVVEELT
RIH
Chain B,D
MHHHHHHRRLVPRGSGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEW HPTHPTTVA
VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS WDYWYCCVDVSVSRQMLA
TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN SYIAEMPHEKPVNAAYFNPTDSTKLLT
TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL
NKFSPTGDVLASGMGFNILIWNREDT
Primary Citation:
Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation 
Cell(Cambridge,Mass.), 147, pp. 1024 - , 2011.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 2 21 21
Cell Constants:
a = 113.1 b = 145.9 c = 224.44 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program.
The R value is 0.24719 for 35416 reflections in
the resolution range 47.72 to 3.8 Ångstroms
with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)